MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.29976813693665233
cnr4.216518982675175
efc0.6030409393567644
fber89.24042510986328
fwhmavg3.9427833333333333
fwhmx3.84219
fwhmy4.08914
fwhmz3.89702
icvscsf0.22101368723056092
icvsgm0.44095678044542674
icvswm0.33802953232401234
inumed1.141400694847107
inurange0.315613752603531
qi10.0
qi20.0016859008222045895
rpvecsf23.457939798740423
rpvegm12.385251955192787
rpvewm19.15296568459126
sizex180
sizey256
sizez256
snrcsf3.0749349914315136
snrgm11.043108462675105
snrtotal11.398007723642259
snrwm20.075979716820157
snrdcsf14.695901160023682
snrdgm28.668882612582134
snrdtotal28.86718490648818
snrdwm43.236770946858734
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.6153604790182614
summarybgmad15.152527809143066
summarybgmean54.196319580078125
summarybgmedian51.72492218017578
summarybgn2750276.0
summarybgp0531.44843864440918
summarybgp9585.66275215148926
summarybgstdv17.293212890625
summarycsfk-0.21648764570905987
summarycsfmad117.9144287109375
summarycsfmean335.7650146484375
summarycsfmedian339.8987731933594
summarycsfn18187.0
summarycsfp05152.6763427734375
summarycsfp95509.86247863769535
summarycsfstdv110.53548431396484
summarygmk0.2087090169080863
summarygmmad57.65217971801758
summarygmmean663.2693481445312
summarygmmedian663.0772705078125
summarygmn32951.0
summarygmp05564.1210632324219
summarygmp95762.79345703125
summarygmstdv60.04352951049805
summarywmk1.059539082404532
summarywmmad43.35109329223633
summarywmmean998.3861083984375
summarywmmedian1000.0152587890625
summarywmn173517.0
summarywmp05911.0689331054687
summarywmp951076.132958984375
summarywmstdv49.81138610839844
tpmoverlapcsf0.1997239589691162
tpmoverlapgm0.5184729695320129
tpmoverlapwm0.5406549572944641
wm2max0.5940825378013713

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumc20379eaeb6039d329fac55e5506977d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.