MRIQC: individual T1w report

Summary

Subject ID: 035_ExercisePre.
Date and time: 2018-05-31, 19:46.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.29976813693665233
cnr			4.216518982675175
efc			0.6030409393567644
fber			89.24042510986328
fwhm	avg		3.9427833333333333
fwhm	x		3.84219
fwhm	y		4.08914
fwhm	z		3.89702
icvs	csf		0.22101368723056092
icvs	gm		0.44095678044542674
icvs	wm		0.33802953232401234
inu	med		1.141400694847107
inu	range		0.315613752603531
qi	1		0.0
qi	2		0.0016859008222045895
rpve	csf		23.457939798740423
rpve	gm		12.385251955192787
rpve	wm		19.15296568459126
size	x		180
size	y		256
size	z		256
snr	csf		3.0749349914315136
snr	gm		11.043108462675105
snr	total		11.398007723642259
snr	wm		20.075979716820157
snrd	csf		14.695901160023682
snrd	gm		28.668882612582134
snrd	total		28.86718490648818
snrd	wm		43.236770946858734
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.6153604790182614
summary	bg	mad	15.152527809143066
summary	bg	mean	54.196319580078125
summary	bg	median	51.72492218017578
summary	bg	n	2750276.0
summary	bg	p05	31.44843864440918
summary	bg	p95	85.66275215148926
summary	bg	stdv	17.293212890625
summary	csf	k	-0.21648764570905987
summary	csf	mad	117.9144287109375
summary	csf	mean	335.7650146484375
summary	csf	median	339.8987731933594
summary	csf	n	18187.0
summary	csf	p05	152.6763427734375
summary	csf	p95	509.86247863769535
summary	csf	stdv	110.53548431396484
summary	gm	k	0.2087090169080863
summary	gm	mad	57.65217971801758
summary	gm	mean	663.2693481445312
summary	gm	median	663.0772705078125
summary	gm	n	32951.0
summary	gm	p05	564.1210632324219
summary	gm	p95	762.79345703125
summary	gm	stdv	60.04352951049805
summary	wm	k	1.059539082404532
summary	wm	mad	43.35109329223633
summary	wm	mean	998.3861083984375
summary	wm	median	1000.0152587890625
summary	wm	n	173517.0
summary	wm	p05	911.0689331054687
summary	wm	p95	1076.132958984375
summary	wm	stdv	49.81138610839844
tpm	overlap	csf	0.1997239589691162
tpm	overlap	gm	0.5184729695320129
tpm	overlap	wm	0.5406549572944641
wm2max			0.5940825378013713

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	c20379eaeb6039d329fac55e5506977d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.